"I can follow along and was able to understand how to determine the new limits of integration. My guess is that multiplying a definite integral by a negative flips the limits but I feel like it would go right back when I substitute back in the original variables."
1) You should know this:
∫abf(x)dx=−∫baf(x)dx
2) Why would you "substitute back in the original variables"? What's the point of changing the limits of integration if you're going to do that?